miscellaneous – Philip W Fowler Computers, biology, proteins Thu, 01 Dec 2016 21:47:28 +0000 en-GB hourly 1 https://wordpress.org/?v=4.6.1 120705945 I’ve moved… /2016/03/14/ive-moved/ /2016/03/14/ive-moved/#comments Mon, 14 Mar 2016 15:11:21 +0000 /?p=3521 → ]]> Today is my first day as a Senior Researcher in in the at the . Practically I’ll be based at the John Radcliffe Hospital in Oxford.

I was a at the for ten years, working with . During that time I used computer simulation to study the function of a variety of membrane proteins, focussing mainly on cell signalling, transporters and ion channels.

Now I will be leading efforts to predict whether novel bacterial mutations lead to antibiotic resistance (or not). The key idea is to examine the effect of each mutation on the binding of the antibiotic to its target protein. This boils down to calculating how the binding free energy changes when you make the mutation — something that alchemical free energy methods, such as thermodynamic integration is well-suited to.

More soon.

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Dr Firdaus Samsudin /2023/11/18/dr-firdaus-samsudin-2/ /2023/11/18/dr-firdaus-samsudin-2/#comments Wed, 18 Nov 2023 11:33:28 +0000 /?p=2961 → ]]> Congratulations to Firdaus Samsudin who successfully defended his DPhil thesis on Tuesday 10 November 2023. His thesis is titled “Improving Oral Drug Delivery: Computational Studies of Proton Dependent Oligopeptide Transporters�?. He has been published one paper, another has been accepted and a third is in preparation.  I will update this post as our papers are published.

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Goodbye Hans Krebs Tower /2014/08/12/goodbye-hans-krebs-tower-2/ /2014/08/12/goodbye-hans-krebs-tower-2/#respond Tue, 12 Aug 2014 12:50:27 +0000 http://philipwfowler.wordpress.com/?p=301 → ]]> When I first started in Oxford our lab was based on the top floor of the Hans Krebs tower. Since 2008 we have been in the imaginatively named “New Biochemistry Building�? which is actually only half a building, but that is another story. To make room for the other half, the Hans Krebs Tower is finally being demolished. In celebration and/or memory I’ve posted a stop motion video I took from my desk out of the 7th floor back in January 2008. You can see several of the characteristic spires of Oxford as well as the plumes from Didcot power station. This too has recently succumbed – 3 of the 6 cooling towers of the old Didcot A power station  three weeks ago.

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